Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21433322_21433473_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

21433322 - 21433473

Intron Length:

152

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTATGTAAC

5'SS Class:

strong_major

3'SS Sequence:

CTTGTTCCTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATGTGAT

U12 Branch Point Sequence:

TGGAATGTGATT

Flanking Amino Acid:

EVWAFIHSLPAQIPC*

Intron Amino Acid Position:

923

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.4

0.74

0.9

75.8

33.3

Major BPS

72.4

0.56

1.2

63.1

44.4

Major PPT

84.1

0.77

0.8

81.3

30.7

Minor 5ss

42.3

-0.9

2.5

50.7

40.4

Minor BPS

41.6

-0.5

2.1

56.71

40.4

Associated Gene:

Gene:

PHC3

Ensembl Gene ID:

ENSAPLG00000008376

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046669

21412610 - 21433490

20881