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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21461104_21462042_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21461104 - 21462042
Intron Length:
939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTATTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTGTTCTTATCT
Flanking Amino Acid:
FKTFAMGLVLVIAVIAATLF
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
77.9
38.6
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
78.8
0.65
0.8
78
29.6
Minor 5ss
34.6
-1.7
2.7
34.2
41.4
Minor BPS
73
0.8
1.5
87.26
38.7

Associated Gene:

Gene:
SEC62
Ensembl Gene ID:
ENSAPLG00000008149
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008468
21459915 - 21472698
12784