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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21464721_21466297_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21464721 - 21466297
Intron Length:
1577

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTATGTATAATT
Flanking Amino Acid:
KDGEKEECKKDETPGTPKKK
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.6
1.07
0.7
84.1
26.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.8
0.81
0.8
77.8
36.7
Minor 5ss
33
-1.9
3.1
41.6
45
Minor BPS
54.2
0.21
2
77.42
39.4

Associated Gene:

Gene:
SEC62
Ensembl Gene ID:
ENSAPLG00000008149
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008468
21459915 - 21472698
12784