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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21466503_21469255_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21466503 - 21469255
Intron Length:
2753

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGACCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATTGTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TATCATCTAACT
Flanking Amino Acid:
TRESVVEYCNRLLKKQFFHR
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
70.8
39.3
Major BPS
100
1.24
0.5
100
0
Major PPT
69.8
0.45
1.2
76.3
37
Minor 5ss
40.7
-1
3.1
57.7
46.5
Minor BPS
54.5
0.22
1.8
76.88
38.8

Associated Gene:

Gene:
SEC62
Ensembl Gene ID:
ENSAPLG00000008149
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008468
21459915 - 21472698
12784