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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21494746_21495893_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21494746 - 21495893
Intron Length:
1148

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCCCAGGTA
5'SS Class:
major
3'SS Sequence:
TTTTCACTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTTCACT
Flanking Amino Acid:
PNILSNRVYPGYSFLQPESM
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.2
0.38
1.2
63
38.2
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
77
0.61
1
80.6
30.6
Minor 5ss
16.2
-3.9
4.1
29.1
43.5
Minor BPS
72.2
0.78
1.7
90.89
33.1

Associated Gene:

Gene:
SAMD7
Ensembl Gene ID:
ENSAPLG00000008148
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008450
21485847 - 21496248
10402