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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21496025_21496162_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21496025 - 21496162
Intron Length:
138

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTGC
5'SS Class:
major
3'SS Sequence:
TTTTTCCTCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCCAT
U12 Branch Point Sequence:
CATGTCTAAACA
Flanking Amino Acid:
SSQFEPRLVDRDLLPSTEMM
Intron Amino Acid Position:
29

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
67.7
38.4
Major BPS
77.3
0.68
1.2
86.7
32.3
Major PPT
89.1
0.88
0.6
85
22.4
Minor 5ss
46.7
-0.3
2.5
62.1
42.5
Minor BPS
53.7
0.11
1.8
63.38
43.3

Associated Gene:

Gene:
SAMD7
Ensembl Gene ID:
ENSAPLG00000008148
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008450
21485847 - 21496248
10402