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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21513714_21514120_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21513714 - 21514120
Intron Length:
407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAATACG
5'SS Class:
major
3'SS Sequence:
TTTTTTCCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCCT
U12 Branch Point Sequence:
TTTTTCTTGTCT
Flanking Amino Acid:
ALSAADVTELASLLPFLPEL
Intron Amino Acid Position:
141

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1.1
68.7
42.2
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
94.3
1
0.5
93.3
15.5
Minor 5ss
35
-1.7
2.7
35.1
40.9
Minor BPS
52.8
0.17
3.5
90.53
33.5

Associated Gene:

Gene:
LRRC31
Ensembl Gene ID:
ENSAPLG00000008135
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008437
21510708 - 21522925
12218