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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21516959_21517825_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21516959 - 21517825
Intron Length:
867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAAAAT
U12 Branch Point Sequence:
ATAAAATTACCA
Flanking Amino Acid:
NLTAKDGESLAEMLTVIPNL
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
83.2
28.5
Major BPS
61.8
0.29
1.1
67.7
34.6
Major PPT
91.8
0.94
0.7
84.6
36
Minor 5ss
36.4
-1.5
3.3
45.9
43.7
Minor BPS
45.2
-0.3
2
58.19
40.4

Associated Gene:

Gene:
LRRC31
Ensembl Gene ID:
ENSAPLG00000008135
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008437
21510708 - 21522925
12218