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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21519633_21520601_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21519633 - 21520601
Intron Length:
969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TTAATCTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
CTGCTCTTAATC
Flanking Amino Acid:
GLGEEPFSSLAEAALHLPEL
Intron Amino Acid Position:
421

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.6
1
0.8
84.6
33.3
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
83.9
0.76
0.8
81.3
35.9
Minor 5ss
37.1
-1.5
3
48.5
47.2
Minor BPS
65.7
0.47
1.3
66.88
39.4

Associated Gene:

Gene:
LRRC31
Ensembl Gene ID:
ENSAPLG00000008135
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008437
21510708 - 21522925
12218