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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21520770_21521966_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21520770 - 21521966
Intron Length:
1197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTACGTATG
5'SS Class:
major
3'SS Sequence:
TCATTTCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
GATGTATTGATT
Flanking Amino Acid:
NLVAEDLALLTLLTQDGHLA
Intron Amino Acid Position:
477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
75.7
40.3
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
85.7
0.8
0.8
80.8
30.9
Minor 5ss
40
-1.1
3
51
39.8
Minor BPS
48.8
-0
1.7
65.06
39.6

Associated Gene:

Gene:
LRRC31
Ensembl Gene ID:
ENSAPLG00000008135
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008437
21510708 - 21522925
12218