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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21526151_21527132_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21526151 - 21527132
Intron Length:
982

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCTGTG
5'SS Class:
major
3'SS Sequence:
CTCTCTTTTTGAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGGTAAC
U12 Branch Point Sequence:
TTTTCCGCAAGG
Flanking Amino Acid:
KKHKKAMALKIKNLWQGLMT
Intron Amino Acid Position:
560

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.53
1.2
67.3
44.3
Major BPS
50.5
0.01
1.3
53.1
40.5
Major PPT
66.8
0.38
1.7
79.8
32.2
Minor 5ss
40.8
-1
3.4
57.9
46.7
Minor BPS
48.5
-0.2
2.5
67.41
46.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007826
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031608
21526004 - 21530663
4660