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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21528630_21529481_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
21528630 - 21529481
Intron Length:
852

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTGCC
5'SS Class:
major
3'SS Sequence:
GACAACTGTCTAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTTTTTTTGACA
Flanking Amino Acid:
LALDDNQIQEIPVEIQELTN
Intron Amino Acid Position:
390

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
67.8
35.6
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
53.6
0.08
1
43.2
42.6
Minor 5ss
40.1
-1.1
3
53.8
43.5
Minor BPS
79.3
0.92
1
85.48
26.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000007826
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031608
21526004 - 21530663
4660