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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21534743_21536258_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21534743 - 21536258
Intron Length:
1516

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTGTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGAAA
U12 Branch Point Sequence:
TTTTTTTTGTCT
Flanking Amino Acid:
GAELIAKALHRNEALVYLRM
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
89
24.3
Major BPS
65.4
0.38
1.4
75.9
36.3
Major PPT
85.9
0.81
0.8
81.2
36.5
Minor 5ss
38.7
-1.3
3
56
41.5
Minor BPS
48.7
-0
3.5
85.97
34.5

Associated Gene:

Gene:
LRRC34
Ensembl Gene ID:
ENSAPLG00000007678
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007986
21532508 - 21542189
9682