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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21536388_21538054_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21536388 - 21538054
Intron Length:
1667

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATT
Flanking Amino Acid:
EKLDLGDCDLGTQCLIAIAT
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
100
1.24
0.5
100
0
Major PPT
90.2
0.9
0.7
85.3
28
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
67.5
0.63
1.7
86.64
33.8

Associated Gene:

Gene:
LRRC34
Ensembl Gene ID:
ENSAPLG00000007678
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007986
21532508 - 21542189
9682