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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21538151_21539787_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21538151 - 21539787
Intron Length:
1637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TGTGTATTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTAATAGAACT
Flanking Amino Acid:
LNRPLLYSQEEETTVHVASM
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
71.4
41.2
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
75.3
0.57
0.9
66.7
44.2
Minor 5ss
45.7
-0.5
2.5
58.3
46.4
Minor BPS
48.9
0
1.9
76.07
39.8

Associated Gene:

Gene:
LRRC34
Ensembl Gene ID:
ENSAPLG00000007678
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007986
21532508 - 21542189
9682