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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21539943_21540036_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21539943 - 21540036
Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TAATCTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTTCTTTTAAAA
Flanking Amino Acid:
NCSLRYLDLSCNRITRDDVK
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
89.6
24.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80.9
0.7
0.9
77.9
35.9
Minor 5ss
46.3
-0.4
2.8
64.1
41.5
Minor BPS
63.5
0.42
1.3
70.55
35

Associated Gene:

Gene:
LRRC34
Ensembl Gene ID:
ENSAPLG00000007678
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007986
21532508 - 21542189
9682