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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21540193_21541588_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21540193 - 21541588
Intron Length:
1396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGC|GTTAGTATT
5'SS Class:
major
3'SS Sequence:
CTCTGTTTATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAT
U12 Branch Point Sequence:
CTTTGCATAACT
Flanking Amino Acid:
ALALHNRTLQALSVVSNNIS
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.2
0.26
1.5
73.9
42.7
Major BPS
75
0.62
1.4
85.7
34.9
Major PPT
73.6
0.53
0.9
73.7
35.6
Minor 5ss
39
-1.2
2.8
49
39.9
Minor BPS
62.4
0.47
2.1
84.77
41.8

Associated Gene:

Gene:
LRRC34
Ensembl Gene ID:
ENSAPLG00000007678
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007986
21532508 - 21542189
9682