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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21549449_21551239_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21549449 - 21551239
Intron Length:
1791

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAACAT
U12 Branch Point Sequence:
CTTGGAAAAACA
Flanking Amino Acid:
LKKHKTKVHTGSETPPDSNT
Intron Amino Acid Position:
527

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
71.9
34.5
Major BPS
54.4
0.11
1
61.4
34.3
Major PPT
90.1
0.9
0.6
84.1
30.8
Minor 5ss
39.7
-1.2
2.9
50.9
45.8
Minor BPS
37.8
-0.9
2.3
52.79
45.3

Associated Gene:

Gene:
MYNN
Ensembl Gene ID:
ENSAPLG00000007481
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007773
21549158 - 21557689
8532