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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21552229_21552926_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
21552229 - 21552926
Intron Length:
698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TGTTCCTTCGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGATCAC
U12 Branch Point Sequence:
CTGCCCTGATCA
Flanking Amino Acid:
ATSSNLKIHARKHSGEKPYV
Intron Amino Acid Position:
410

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
69.6
42.7
Major BPS
63.2
0.33
1.2
65.7
41
Major PPT
82
0.72
0.8
76.9
31.7
Minor 5ss
30.2
-2.3
3.3
39.5
46.1
Minor BPS
49.9
-0
1.8
61.72
44.1

Associated Gene:

Gene:
MYNN
Ensembl Gene ID:
ENSAPLG00000007481
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007773
21549158 - 21557689
8532