About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21553087_21554897_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21553087 - 21554897
Intron Length:
1811

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTTACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACGTAAA
U12 Branch Point Sequence:
TGTTTTTTACCA
Flanking Amino Acid:
QLKTHVRTHTGEKPYKCELC
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
38.3
Major BPS
53.8
0.1
1.2
55.6
37.8
Major PPT
83.5
0.75
0.9
78
40.1
Minor 5ss
45.6
-0.5
2.9
65
46.2
Minor BPS
65.7
0.49
1.6
75.16
36.6

Associated Gene:

Gene:
MYNN
Ensembl Gene ID:
ENSAPLG00000007481
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007773
21549158 - 21557689
8532