Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21568822_21569427_R

Intron Information:

Intron Rank:

151011

Intron Class:

major

Intron Phase:

Intron Coordinates:

21568822 - 21569427

Intron Length:

606

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGGATGA

5'SS Class:

strong_major

3'SS Sequence:

GTAATTACTCTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACTTAAT

U12 Branch Point Sequence:

TTTTACTTGATA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.7

0.72

68.7

39.1

Major BPS

78.2

0.7

77.9

32.1

Major PPT

65.6

0.35

56.3

44.2

Minor 5ss

35.9

-1.6

3.3

47.3

48.1

Minor BPS

74.2

0.76

1.4

83.44

30.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000028748

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042660

21567289 - 21569485

2197