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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21864580_21865431_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21864580 - 21865431
Intron Length:
852

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGTGA
5'SS Class:
major
3'SS Sequence:
ACTCATTTCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAT
U12 Branch Point Sequence:
TCTTGGTTAATG
Flanking Amino Acid:
KHYECENCAKQVFTDPSNLQ
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.1
0.47
1.1
60.1
41.3
Major BPS
87.1
0.92
0.7
85.9
22.5
Major PPT
70
0.45
0.9
61.8
39
Minor 5ss
34.4
-1.8
3.5
47.2
48.2
Minor BPS
49
-0.2
2.5
62.41
46.2

Associated Gene:

Gene:
MECOM
Ensembl Gene ID:
ENSAPLG00000012134
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039767
21860121 - 21895201
35081