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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21874815_21877693_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21874815 - 21877693
Intron Length:
2879

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTGCTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCAAT
U12 Branch Point Sequence:
TTTGTTTCAATT
Flanking Amino Acid:
PSPGFLFHPQFQLPDQRIWM
Intron Amino Acid Position:
673

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
76.9
0.67
1.2
85
31.9
Major PPT
78.6
0.64
0.9
70
40.8
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
60.8
0.42
1.6
79.05
38

Associated Gene:

Gene:
MECOM
Ensembl Gene ID:
ENSAPLG00000012134
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039767
21860121 - 21895201
35081