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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21877721_21885388_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
21877721 - 21885388
Intron Length:
7668

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TTCACCGTGACG
Flanking Amino Acid:
QFQLPDQRIWMSAIENMAEK
Intron Amino Acid Position:
682

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.86
0.9
77.7
33.5
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
85.1
0.79
0.8
80.1
31.8
Minor 5ss
40
-1.1
2.7
42.4
44.3
Minor BPS
51
-0.1
2.2
63.25
44.8

Associated Gene:

Gene:
MECOM
Ensembl Gene ID:
ENSAPLG00000012134
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039767
21860121 - 21895201
35081