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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2191859_2200142_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
2191859 - 2200142
Intron Length:
8284

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGAGGC
5'SS Class:
major
3'SS Sequence:
TCTCTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACACAC
U12 Branch Point Sequence:
ACACACACACCT
Flanking Amino Acid:
PNSKCTWKITVPEGKVVVLS
Intron Amino Acid Position:
51

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.1
58.3
39.7
Major BPS
49.1
-0
0.9
56.3
29.4
Major PPT
85.8
0.81
0.7
80.7
24.4
Minor 5ss
33
-1.9
3.4
47.3
42.4
Minor BPS
38
-0.8
2
51.45
42

Associated Gene:

Gene:
PCOLCE2
Ensembl Gene ID:
ENSAPLG00000002646
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002673
2191709 - 2217052
25344