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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21946066_21947037_R

Intron Information:

Intron Rank:
30
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21946066 - 21947037
Intron Length:
972

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCCAA
5'SS Class:
major
3'SS Sequence:
CTGTTTCCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
GGGTGTTTAACA
Flanking Amino Acid:
PGFIGADCSKTCPENRFGKD
Intron Amino Acid Position:
1271

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.1
0.66
1
67.9
39.2
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
83.6
0.76
0.8
81.3
30.7
Minor 5ss
38.9
-1.2
3.1
47.7
42.3
Minor BPS
57.7
0.24
1.8
64.52
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012526
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013060
21944074 - 22126429
182356