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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21955718_21955909_R

Intron Information:

Intron Rank:
27
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21955718 - 21955909
Intron Length:
192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTGAGTGTC
5'SS Class:
major
3'SS Sequence:
GTCACCCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
CAGGTACTAACG
Flanking Amino Acid:
KGWRGRHCDKPCLPGHYGMG
Intron Amino Acid Position:
1142

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.2
75.7
34.4
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
73.4
0.53
0.9
65.6
35.9
Minor 5ss
33.2
-1.9
3.3
42.7
38
Minor BPS
41.3
-0.8
1.9
41.65
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012526
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013060
21944074 - 22126429
182356