About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21959199_21963477_R

Intron Information:

Intron Rank:
23
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
21959199 - 21963477
Intron Length:
4279

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGC|GTACGTAGC
5'SS Class:
weak_major
3'SS Sequence:
TCTCTCGTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TGTGCTCTGATT
Flanking Amino Acid:
PGWLGETCEQPCQRDRYGQG
Intron Amino Acid Position:
971

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.7
0.23
1.4
58.2
46.8
Major BPS
79
0.72
1
69
38.9
Major PPT
82
0.72
0.8
76.3
32.2
Minor 5ss
35.9
-1.6
2.9
40.5
38.9
Minor BPS
51.2
0.12
1.8
72.08
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012526
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013060
21944074 - 22126429
182356