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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21963607_21968437_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21963607 - 21968437
Intron Length:
4831

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGCTG
5'SS Class:
major
3'SS Sequence:
TTCGCATTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACATAT
U12 Branch Point Sequence:
CTTTGCTAAAAA
Flanking Amino Acid:
AGWMGTFCGKACPEGFFGLD
Intron Amino Acid Position:
928

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.1
57.3
47
Major BPS
66.4
0.41
1
61.3
37
Major PPT
80.5
0.69
0.9
77.2
36
Minor 5ss
33.4
-1.9
3.6
47.4
48
Minor BPS
49.9
-0
2.2
68.09
44.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012526
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013060
21944074 - 22126429
182356