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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21971510_21973907_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21971510 - 21973907
Intron Length:
2398

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTAAGTCAG
5'SS Class:
major
3'SS Sequence:
TTTTGCATTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TCATTCTCAACA
Flanking Amino Acid:
PGWTGHDCKHPCSSGRWGLR
Intron Amino Acid Position:
841

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.42
1.4
60.1
46.2
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
85.1
0.79
0.8
82.2
34.1
Minor 5ss
35.4
-1.7
2.9
45.9
42.4
Minor BPS
66.1
0.5
1.5
72.11
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012526
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013060
21944074 - 22126429
182356