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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21975081_21976195_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21975081 - 21976195
Intron Length:
1115

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTTGTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCAAAT
U12 Branch Point Sequence:
GCGTGGGTATCT
Flanking Amino Acid:
AGKTGATCEEDCPEGQWGSG
Intron Amino Acid Position:
754

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92
0.99
0.7
82.8
24.2
Major BPS
53.3
0.08
1.1
59
36
Major PPT
83.8
0.76
0.8
76.9
37.3
Minor 5ss
35
-1.7
2.7
41.6
45
Minor BPS
34.2
-1.1
2.7
51.51
48.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012526
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013060
21944074 - 22126429
182356