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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21976703_21977701_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21976703 - 21977701
Intron Length:
999

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAACAG
5'SS Class:
major
3'SS Sequence:
TCGCATTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATCC
Flanking Amino Acid:
PGYHGKKCQKECSPGFYGAG
Intron Amino Acid Position:
667

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.4
0.46
1.1
55.8
43.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
77.6
0.62
0.9
68.7
41.7
Minor 5ss
29.3
-2.4
3.4
37.9
47
Minor BPS
76.7
0.82
1.5
85.84
32.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012526
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013060
21944074 - 22126429
182356