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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_21984707_21985246_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
21984707 - 21985246
Intron Length:
540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTGAG
U12 Branch Point Sequence:
TTGAGCCTAACC
Flanking Amino Acid:
QPSTDGCGCDDVDECHLENG
Intron Amino Acid Position:
402

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
75.3
34.6
Major BPS
51.1
0.03
1.5
51.1
44.3
Major PPT
86.6
0.82
0.7
80.5
31.5
Minor 5ss
30.4
-2.2
3.2
42.4
44.3
Minor BPS
49.9
-0
2.1
67.89
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012526
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013060
21944074 - 22126429
182356