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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22020992_22110545_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22020992 - 22110545
Intron Length:
89554

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCACCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
CCACTTTTGACT
Flanking Amino Acid:
AGFQGPRCQYDVNECTTENG
Intron Amino Acid Position:
151

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
72
34.7
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
76.4
0.59
0.8
69.8
29.8
Minor 5ss
28.2
-2.5
2.7
28.9
37.2
Minor BPS
55.2
0.24
1.3
64.06
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012526
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013060
21944074 - 22126429
182356