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Intron Name: Anas_platyrhynchos_platyrhynchos_9_2202111_2205153_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2202111 - 2205153

Intron Length:

3043

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGTGC

5'SS Class:

strong_major

3'SS Sequence:

ACTTTCTCTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAGTTAT

U12 Branch Point Sequence:

GTTATTTGCACT

Flanking Amino Acid:

SWHIVAPKNQLIELKFEKFD

Intron Amino Acid Position:

178

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.7

0.91

0.9

73.9

Major BPS

64.7

0.37

1.2

55.4

41.7

Major PPT

83.4

0.75

0.8

77.6

30.4

Minor 5ss

37.1

-1.5

3.3

50.2

46.4

Minor BPS

47.7

-0.1

1.9

69.77

41.2

Associated Gene:

Gene:

PCOLCE2

Ensembl Gene ID:

ENSAPLG00000002646

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002673

2191709 - 2217052

25344