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Intron Name: Anas_platyrhynchos_platyrhynchos_9_2205291_2210137_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

2205291 - 2210137

Intron Length:

4847

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTAAGTAAC

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTATTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AACTAAT

U12 Branch Point Sequence:

TTTTTTTCTATT

Flanking Amino Acid:

IGKYCGDSPPGPILSEKNEL

Intron Amino Acid Position:

223

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.7

0.89

0.9

81.4

32.7

Major BPS

77.9

0.69

0.8

75.9

Major PPT

89.3

0.88

0.7

81.9

34.4

Minor 5ss

35.6

-1.6

2.7

37.5

40.1

Minor BPS

55.1

0.24

1.8

79.15

37.3

Associated Gene:

Gene:

PCOLCE2

Ensembl Gene ID:

ENSAPLG00000002646

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002673

2191709 - 2217052

25344