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Intron Name: Anas_platyrhynchos_platyrhynchos_9_2210293_2212526_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

2210293 - 2212526

Intron Length:

2234

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGATTT

5'SS Class:

strong_major

3'SS Sequence:

GCTCTTCAAAAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TCAATTTTAATT

Flanking Amino Acid:

PTTTTTPSTSSLKPTVALCQ

Intron Amino Acid Position:

275

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

0.9

84.4

26.9

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

55.5

0.12

1.1

36.9

Minor 5ss

45.6

-0.5

3.1

65.7

39.5

Minor BPS

64.1

0.52

1.2

72.54

39.1

Associated Gene:

Gene:

PCOLCE2

Ensembl Gene ID:

ENSAPLG00000002646

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000002673

2191709 - 2217052

25344