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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22112246_22112520_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22112246 - 22112520
Intron Length:
275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
ATTCTCTTCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACTAAT
U12 Branch Point Sequence:
TTCTCCTGAACT
Flanking Amino Acid:
GRRWCMGYERRSGYYTVYKQ
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
92.8
22.7
Major BPS
77.9
0.69
0.8
75.9
25
Major PPT
70.5
0.46
1
71
33
Minor 5ss
41.7
-0.9
2.9
60.3
44.1
Minor BPS
81.3
1.06
1.3
93.08
35.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012526
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013060
21944074 - 22126429
182356