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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2212611_2215167_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2212611 - 2215167
Intron Length:
2557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
AATAATTAAAAT
Flanking Amino Acid:
LESNYCSSNFVITGTVITAI
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
72
39.5
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
90.2
0.9
0.6
84.6
30.4
Minor 5ss
33.3
-1.9
2.9
41.4
44.7
Minor BPS
45.8
-0.2
1.9
62.82
40.7

Associated Gene:

Gene:
PCOLCE2
Ensembl Gene ID:
ENSAPLG00000002646
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002673
2191709 - 2217052
25344