Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22131410_22138725_R

Intron Information:

Intron Rank:

142184

Intron Class:

major

Intron Phase:

Intron Coordinates:

22131410 - 22138725

Intron Length:

7316

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACT|GTAAGTATA

5'SS Class:

major

3'SS Sequence:

TCTTCCCTTCTAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGTTCAC

U12 Branch Point Sequence:

AAATTGTTCACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.8

0.65

1.1

80.4

Major BPS

74.9

0.62

1.1

77.4

37.4

Major PPT

81.6

0.71

0.7

73.9

31.2

Minor 5ss

42.2

-0.9

2.9

61.3

Minor BPS

46.9

-0.1

2.4

67.86

42.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000023831

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045255

22128619 - 22138758

10140