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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_2215336_2216921_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
2215336 - 2216921
Intron Length:
1586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCTTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
TGCCTTGTAATA
Flanking Amino Acid:
VCKQCPLIRRGLNYIIMGQV
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
87.1
30
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
81.1
0.7
0.7
76.6
25.4
Minor 5ss
35.1
-1.7
2.7
42.8
44
Minor BPS
46.7
-0.2
1.9
56.23
37.7

Associated Gene:

Gene:
PCOLCE2
Ensembl Gene ID:
ENSAPLG00000002646
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002673
2191709 - 2217052
25344