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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22173172_22174504_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22173172 - 22174504
Intron Length:
1333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTATGTTCT
5'SS Class:
major
3'SS Sequence:
TTCTTTTAAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TTTCTTTTAAAC
Flanking Amino Acid:
EKEQEISKLKESLYNLREEN
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
74.1
37.2
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
79.5
0.66
0.9
77.4
34.7
Minor 5ss
48.5
-0.1
2.4
59.5
45
Minor BPS
68.8
0.57
1.3
76.65
32.7

Associated Gene:

Gene:
GOLIM4
Ensembl Gene ID:
ENSAPLG00000013038
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047878
22155956 - 22186808
30853
ENSAPLT00000013602
22155956 - 22186808
30853