About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22174588_22178099_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22174588 - 22178099
Intron Length:
3512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCTTT
5'SS Class:
strong_major
3'SS Sequence:
GTGTTGACTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GTGTAATTAATG
Flanking Amino Acid:
DIHTQLQDVKSQVEEYKQLK
Intron Amino Acid Position:
262

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
78.8
38.3
Major BPS
83
0.82
0.8
82
24.9
Major PPT
67.3
0.39
1
63.7
42.8
Minor 5ss
48.4
-0.1
3.2
72.7
44.5
Minor BPS
51.2
-0.1
1.9
58.52
43

Associated Gene:

Gene:
GOLIM4
Ensembl Gene ID:
ENSAPLG00000013038
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047878
22155956 - 22186808
30853