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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22179382_22180613_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22179382 - 22180613
Intron Length:
1232

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGGAGA
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTCTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTGAAT
U12 Branch Point Sequence:
ATTTCTCTGACA
Flanking Amino Acid:
NMLGERSQSEITPTKAVTKR
Intron Amino Acid Position:
457

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.4
40.1
Major BPS
65.8
0.39
1.4
75.7
36.5
Major PPT
77.1
0.61
1
73.2
36.7
Minor 5ss
37.7
-1.4
3.1
48.6
47.2
Minor BPS
65.3
0.47
1.6
77.47
32.5

Associated Gene:

Gene:
GOLIM4
Ensembl Gene ID:
ENSAPLG00000013038
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047878
22155956 - 22186808
30853
ENSAPLT00000013602
22155956 - 22186808
30853