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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22181511_22181978_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
22181511 - 22181978
Intron Length:
468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
AAAAATTTGTCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ACTTCTGTAATA
Flanking Amino Acid:
EEQGIQEEEAAYERDNQHQD
Intron Amino Acid Position:
563

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
80
0.75
1
78.6
31
Major PPT
58.3
0.19
1.2
55.1
48.4
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
57.5
0.23
2
68.85
38.5

Associated Gene:

Gene:
GOLIM4
Ensembl Gene ID:
ENSAPLG00000013038
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047878
22155956 - 22186808
30853
ENSAPLT00000013602
22155956 - 22186808
30853