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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22186308_22186655_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22186308 - 22186655
Intron Length:
348

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTAATCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTTTTTAATC
Flanking Amino Acid:
EEPYGENDENADEKNNGGAD
Intron Amino Acid Position:
707

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
82.6
29.4
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
84.6
0.78
0.9
86.5
31.5
Minor 5ss
35.4
-1.7
2.9
48.5
40.3
Minor BPS
81.7
0.97
0.9
85.33
26

Associated Gene:

Gene:
GOLIM4
Ensembl Gene ID:
ENSAPLG00000013038
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047878
22155956 - 22186808
30853
ENSAPLT00000013602
22155956 - 22186808
30853