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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22204977_22207021_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22204977 - 22207021
Intron Length:
2045

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTCTT
5'SS Class:
major
3'SS Sequence:
GTCTCTTTTTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
CTTCTCTCAATT
Flanking Amino Acid:
PCEFQESYRQHVFFSLPNLK
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
75.9
39.9
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
74.7
0.56
1
78.7
33.6
Minor 5ss
42.4
-0.8
3.1
65
39.9
Minor BPS
62.2
0.46
1.5
77.15
39.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013337
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013891
22204865 - 22215733
10869