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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22210266_22210887_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
22210266 - 22210887
Intron Length:
622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTAAGTGTT
5'SS Class:
major
3'SS Sequence:
TGCTTTTTTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTATTTATTT
Flanking Amino Acid:
QNWDSGLPSPLPSDSFKYLS
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1
79.3
34.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
77.8
0.62
1
82.5
32.9
Minor 5ss
40.8
-1
3.4
63.8
41.6
Minor BPS
57.6
0.32
1.8
76.35
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013337
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013891
22204865 - 22215733
10869