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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22211039_22215707_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
22211039 - 22215707
Intron Length:
4669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAGGG
5'SS Class:
major
3'SS Sequence:
AACTCCTCTCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
ACTGGTTTAACA
Flanking Amino Acid:
MQQQDMSESSSGLTTSNQ
Intron Amino Acid Position:
9

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
60.8
44.4
Major BPS
74.8
0.62
1
67
39.8
Major PPT
68.6
0.42
0.9
59.3
37.2
Minor 5ss
28.4
-2.5
3.5
38
46.9
Minor BPS
54.9
0.15
1.9
64.77
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013337
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013891
22204865 - 22215733
10869