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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_9_22231017_22231792_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
22231017 - 22231792
Intron Length:
776

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTTTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CTTTCCTTCCCC
Flanking Amino Acid:
FFFLVRNRRTGTVLFMGRVM
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.7
86.7
23
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
87.3
0.84
0.7
80
32
Minor 5ss
38.4
-1.3
3.3
55.7
48.5
Minor BPS
45.8
-0.3
3.6
73.88
43.5

Associated Gene:

Gene:
SERPINI1
Ensembl Gene ID:
ENSAPLG00000013347
Chromosome:
9

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040691
22230879 - 22274536
43658
ENSAPLT00000013939
22230940 - 22265790
34851